Download

Program

NameDescriptionDownload
CAFE source codeSource code (version 1.0.1)download
CAFE manualUser manualdownload

Requirement

CAFE was developed in a Linux environment (CentOS 6.8). Cufflinks, SAMtools, Perl, and Python 2.7 are required to run this program.

License

Annotations

NameDescriptionFormatDownload
BIGTranscriptomeENCODE, Human BodyMap 2.0, and GEO (112 RNA-seqs from 35 cell-types and tissues)gtfdownload
BIGTranscriptome-TSGTEx and TCGA (4,821 RNA-seqs from 19 tissues and tumors)gtfdownload
BIGTranscriptome lncRNA catalogKnown and novel lncRNAs annotated from BIGTranscriptomegtfdownload

RPDs

RPDs (the reads with predicted directions) files are available at the following link.

Download RPDs

Expression values

Expression values (read count) quantified from RPD BAM files are available at the following link.

Download Expression values